protti: anova_protti – R documentation

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anova_protti

Perform ANOVA

Performs an ANOVA statistical test

anova_protti(data, grouping, condition, mean_ratio, sd, n)

`data`	A data frame containing at least the input variables.
`grouping`	The column in the data frame containing precursor or peptide identifiers.
`condition`	The column in the data frame containing the conditions.
`mean_ratio`	The column in the data frame containing mean intensities or mean intensity ratios.
`sd`	The column in the data frame containing the standard deviation corresponding to the mean.
`n`	The column in the data frame containing the number of replicates for which the corresponding mean was calculated.

A data frame that contains the within group error (ms_group) and the between group error (ms_error), f statistic and p-values.

## Not run: 
anova_protti(
  data,
  grouping = eg_precursor_id,
  condition = r_condition,
  mean = mean,
  sd = sd,
  n = n
)

## End(Not run)

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release