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fetch_go

Fetch gene ontology information from geneontology.org


Description

Fetches gene ontology data from geneontology.org for the provided organism ID.

Usage

fetch_go(organism_id)

Arguments

organism_id

An NCBI taxonomy identifier of an organism (TaxId). Possible inputs inlude only: "9606" (Human), "559292" (Yeast) and "83333" (E. coli).

Value

A data frame that contains gene ontology mappings to UniProt or SGD IDs. The original file is a .GAF file. A detailed description of all columns can be found here: http://geneontology.org/docs/go-annotation-file-gaf-format-2.1/

Examples

fetch_go("9606")

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1
MIT + file LICENSE
Authors
Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]
Initial release

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