protti: fetch_kegg – R documentation

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fetch_kegg

Fetch KEGG pathway data from KEGG

Description

Fetches gene IDs and corresponding pathway IDs and names for the provided organism.

Usage

fetch_kegg(species)

Arguments

species

a character vector providing an abreviated species name. "hsa" for human, "eco" for E. coli and "sce" for S. cerevisiae. Additional possible names can be found for eukaryotes and for prokaryotes.

Value

A data frame that contains gene IDs with corresponding pathway IDs and names for a selected organism.

Examples

head(fetch_kegg(species = "hsa"))

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release