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fetch_mobidb

Fetch protein disorder information from MobiDB


Description

Fetches information about disordered protein regions from MobiDB.

Usage

fetch_mobidb(organism_id, protein_ids)

Arguments

organism_id

An NCBI taxonomy identifier of an organism (TaxId). Possible inputs inlude only: "9606" (Human), "559292" (Yeast), "83333" (E. coli), "10090" (Mouse), "9913" (Bovine), "7227" (Fruit fly).

protein_ids

A character vector of UniProt identifiers. These need to be proteins from the organism provided in organism_id.

Value

A data frame that contains start and end positions for disordered regions for each protein provided. The feature column contains information on the source of this annotation. More information on the source can be found here.

Examples

fetch_mobidb(
  organism_id = "83333",
  protein_ids = c("P36578", "O43324", "Q00796")
)

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1
MIT + file LICENSE
Authors
Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]
Initial release

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