protti: qc_sequence_coverage – R documentation

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qc_sequence_coverage

Protein coverage distribution

Plots the distribution of protein coverages in a histogram.

qc_sequence_coverage(
  data,
  protein_identifier,
  coverage,
  sample = NULL,
  interactive = FALSE
)

`data`	A data frame containing at least the input variables.
`protein_identifier`	Column in the data frame containing protein identifiers.
`coverage`	Column in the data frame containing protein coverage in percent. This information can be obtained using the `sequence_coverage` function.
`sample`	Column in the data frame containing sample names. Please only provide this argument if you want to facet the distribution plot by sample otherwise do not provide this argument.
`interactive`	A logical, if TRUE the plot is interactive (default is TRUE).

A protein coverage histogram with 5 percent binwidth. The vertical dotted line indicates the median.

## Not run: 
qc_sequence_coverage(
  data,
  protein_identifier = pg_protein_accessions,
  coverage = coverage
)

## End(Not run)

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release