protti: replace_identified_by_x – R documentation

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replace_identified_by_x

Replace identified positions in protein sequence by "x"

Helper function for the calculation of sequence coverage, replaces identified positions with an "x" within the protein sequence.

replace_identified_by_x(sequence, positions_start, positions_end)

`sequence`	A character vector that contains the protein sequence.
`positions_start`	A vector of start positions of the identified peptides.
`positions_end`	A vector of end positions of the identified peptides.

A character vector that contains the modified protein sequence with each identified position replaced by "x".

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release