Protein sequence coverage
Calculate sequence coverage for each identified protein.
sequence_coverage(data, protein_sequence, peptides)
data |
A dataframe containing at least the protein sequence and the identified peptides as columns. |
protein_sequence |
A column containing protein sequences, can be obtained by using the function |
peptides |
A column containing the identified peptides. |
A new column containing the calculated sequence coverages for each identified protein
data <- data.frame(
protein_sequence = c("abcdefghijklmnop", "abcdefghijklmnop"),
pep_stripped_sequence = c("abc", "jklmn")
)
sequence_coverage(
data,
protein_sequence = protein_sequence,
peptides = pep_stripped_sequence
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