protti: split_metal_name – R documentation

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split_metal_name

Convert metal names to search pattern

Description

Converts a vector of metal names extracted from the feature_metal_binding column obtained with fetch_uniprot to a pattern that can be used to search for corresponding ChEBI IDs. This is used as a helper function for other functions.

Usage

split_metal_name(metal_names)

Arguments

metal_names

A character vector containing names of metals and metal containing molecules.

Value

A character vector with metal name search patterns.

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v0.1.1

MIT + file LICENSE

Authors

Jan-Philipp Quast [aut, cre], Dina Schuster [aut], ETH Zurich [cph, fnd]

Initial release