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c.scanoneperm

Combine data from scanone permutations


Description

Concatenate the data for multiple runs of scanone with n.perm > 0.

Usage

## S3 method for class 'scanoneperm'
c(...)
## S3 method for class 'scanoneperm'
rbind(...)

Arguments

...

A set of objects of class scanoneperm. (This can also be a list of scanoneperm objects.) These are the permutation results from scanone (that is, when n.perm > 0). These must all have the same number of columns. (That is, they must have been created with the same number of phenotypes, and it is assumed that they were generated in precisely the same way.)

Details

The aim of this function is to concatenate the results from multiple runs of a permutation test scanone, to assist with the case that such permutations are done on multiple processors in parallel.

Value

The concatenated input, as a scanoneperm object.

Author(s)

Karl W Broman, broman@wisc.edu

See Also

Examples

data(fake.f2)

fake.f2 <- calc.genoprob(fake.f2)
operm1 <- scanone(fake.f2, method="hk", n.perm=100, perm.Xsp=TRUE)
operm2 <- scanone(fake.f2, method="hk", n.perm=50, perm.Xsp=TRUE)

operm <- c(operm1, operm2)

qtl

Tools for Analyzing QTL Experiments

v1.48-1
GPL-3
Authors
Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team
Initial release
2021-03-24

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