Condense the output from a 2-d genome scan
Produces a very condensed version of the output of scantwo.
## S3 method for class 'scantwo' condense(object)
object |
An object of class |
This produces a very reduced version of the output of
scantwo, for which a summary may still be created
via summary.scantwo, though plots can no longer be
made.
An object of class scantwocondensed, containing just the
maximum full, additive and interactive LOD scores, and the positions
where they occured, on each pair of chromosomes.
Karl W Broman, broman@wisc.edu
data(fake.f2) fake.f2 <- calc.genoprob(fake.f2) out2 <- scantwo(fake.f2, method="hk") out2c <- condense(out2) summary(out2c, allpairs=FALSE) max(out2c)
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