qtl: convert2risib – R documentation

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Documentation

qtl

convert2risib

Convert a cross to RIL by sib mating

Description

Convert a cross to type "risib" (RIL by sib mating).

Usage

convert2risib(cross)

Arguments

cross

An object of class cross. See read.cross for details.

Details

If there are more genotypes with code 3 (BB) than code 2 (AB), we omit the genotypes with code==2 and call those with code==3 the BB genotypes.

If, instead, there are more genotypes with code 2 than code 3, we omit the genotypes with code==3 and call those with code==2 the BB genotypes.

Value

The input cross object, with genotype codes possibly changed and cross type changed to "risib".

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(hyper)
hyper.as.risib <- convert2risib(hyper)

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24