qtl: movemarker – R documentation

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Documentation

qtl

movemarker

Move a marker to a new chromosome

Description

Move a specified marker to a different chromosome.

Usage

movemarker(cross, marker, newchr, newpos)

Arguments

`cross`	An object of class `cross`. See `read.cross` for details.
`marker`	The name of the marker to be moved (a character string).
`newchr`	The chromosome to which the marker should be moved.
`newpos`	The position (in cM) at which the marker should be placed. If missing, the marker is placed at the end of the chromosome.

Value

The input cross object, but with the specified marker moved to the specified chromosome.

All intermediate calculations (such as the results of calc.genoprob and est.rf) are removed.

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(badorder)
badorder <- movemarker(badorder, "D2M937", 3, 48.15)
badorder <- movemarker(badorder, "D3M160", 2, 28.83)

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24