MQM marker extraction
Extract the real markers from a cross object that includes pseudo markers
mqmextractmarkers(mqmresult)
mqmresult |
result from |
Returns a scanone object with the pseudo markers removed
Ritsert C Jansen; Danny Arends; Pjotr Prins; Karl W Broman broman@wisc.edu
The MQM tutorial: https://rqtl.org/tutorials/MQM-tour.pdf
MQM - MQM description and references
mqmscan - Main MQM single trait analysis
mqmscanall - Parallellized traits analysis
mqmaugment - Augmentation routine for estimating missing data
mqmautocofactors - Set cofactors using marker density
mqmsetcofactors - Set cofactors at fixed locations
mqmpermutation - Estimate significance levels
scanone - Single QTL scanning
data(multitrait) multitrait <- fill.geno(multitrait) result <- mqmscan(multitrait) newresult <- mqmextractmarkers(result)
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