Plot cofactors on the genetic map
Plots cofactors as created by mqmsetcofactors
or mqmautocofactors on the genetic map.
mqmplot.cofactors(cross,cofactors, ...)
cross |
An object of class |
cofactors |
List of cofactors to be analysed in the QTL model. To set cofactors use |
.
... |
Passed to |
Danny Arends danny.arends@gmail.com
The MQM tutorial: https://rqtl.org/tutorials/MQM-tour.pdf
MQM - MQM description and references
mqmscan - Main MQM single trait analysis
mqmscanall - Parallellized traits analysis
mqmaugment - Augmentation routine for estimating missing data
mqmautocofactors - Set cofactors using marker density
mqmsetcofactors - Set cofactors at fixed locations
mqmpermutation - Estimate significance levels
scanone - Single QTL scanning
data(multitrait) cof1 <- mqmsetcofactors(multitrait,20) cof2 <- mqmsetcofactors(multitrait,10) op <- par(mfrow=c(2,1)) mqmplot.cofactors(multitrait,cof1,col="blue") mqmplot.cofactors(multitrait,cof2,col="blue") op <- par(mfrow=c(1,1))
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