qtl: plot.comparegeno – R documentation

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plot.comparegeno

Plot genotype comparison

Description

Plot the results of the comparison of all pairs of individuals' genotypes. A histogram of the proportion of matching genotypes, with tick marks at individual values below, via rug.

Usage

## S3 method for class 'comparegeno'
plot(x, breaks=NULL, main="",
     xlab="Proportion matching genotypes", ...)

Arguments

`x`	An object of class `"comparegeno"`, as produced by `comparegeno`.
`breaks`	Passed to `hist`, with the default 2 √{n} where n is the number of pairs of individuals.
`main`	Title for the plot.
`xlab`	x-axis label for the plot.
`...`	Passed to `hist`.

Details

Creates a histogram with hist with ticks at individual values using rug.

Value

None.

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(fake.f2)
cg <- comparegeno(fake.f2)
plot(cg)

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24