qtl: replace.map – R documentation

Pricing

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

Get Started for Free

Documentation

qtl

replace.map

Replace the genetic map of a cross

Description

Replace the map portion of a cross object.

Usage

replace.map(cross, map)
## S3 method for class 'cross'
replacemap(object, map)

Arguments

`cross`	An object of class `cross`. See `read.cross` for details.
`object`	Same as `cross`.
`map`	A list containing the new genetic map. This must be the same length and with the same marker names as that contained in `cross`.

Value

The input cross object with the genetic map replaced by the input map. Maps for results from calc.genoprob, sim.geno and argmax.geno are also replaced, using interpolation if necessary.

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(fake.f2)

newmap <- est.map(fake.f2)
plotMap(fake.f2, newmap)
fake.f2 <- replace.map(fake.f2, newmap)

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24