Simulate founder SNPs for a multiple-strain RIL
Simulate genotype data for the founding strains for a panel of multiple-strain RIL.
simFounderSnps(map, n.str=c("4","8"), pat.freq)map |
A list whose components are vectors containing the marker locations on each of the chromosomes. |
n.str |
Number of founding strains (4 or 8). |
pat.freq |
Frequency of SNP genotype patterns in the founder (a
vector of length |
The SNPs are simulated to be in linkage equilibrium.
A vector of the same length as there are chromosomes in map,
with each component being a matrix of 0's and 1's, of dim n.str
x n.mar.
Karl W Broman, broman@wisc.edu
data(map10) x <- simFounderSnps(map10, "8", c(0, 0.5, 0.2, 0.2, 0.1))
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