qtl: strip.partials – R documentation

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Documentation

qtl

strip.partials

Strip partially informative genotypes

Description

Replace all partially informative genotypes (e.g., dominant markers in an intercross) with missing values.

Usage

strip.partials(cross, verbose=TRUE)

Arguments

`cross`	An object of class `cross`. See `read.cross` for details.
`verbose`	If TRUE, print the number of genotypes removed.

Value

The same class cross object as in the input, but with partially informative genotypes made missing.

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(listeria)
sum(nmissing(listeria))
listeria <- strip.partials(listeria)
sum(nmissing(listeria))

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24