qtl: summary.comparegeno – R documentation

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summary.comparegeno

Print pairs of individuals with similar genotype data.

Description

Prints a summary the output from comparegeno that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold.

Usage

## S3 method for class 'comparegeno'
summary(object, thresh=0.9, ...)

Arguments

`object`	An object of class `comparegeno`, the output of the function `comparegeno`.
`thresh`	Threshold on the proportion of matching genotypes.
`...`	Ignored at this point.

Value

A data frame with each row being a pair of individuals and columns including the individual identifiers (via getid, or just as numeric indexes) along with the proportion of matching genotypes.

Author(s)

Karl W Broman, broman@wisc.edu

Examples

data(fake.f2)
cg <- comparegeno(fake.f2)
summary(cg, 0.7)

qtl

Tools for Analyzing QTL Experiments

v1.48-1

GPL-3

Authors

Karl W Broman <broman@wisc.edu> and Hao Wu, with ideas from Gary Churchill and Saunak Sen and contributions from Danny Arends, Robert Corty, Timothee Flutre, Ritsert Jansen, Pjotr Prins, Lars Ronnegard, Rohan Shah, Laura Shannon, Quoc Tran, Aaron Wolen, Brian Yandell, and R Core Team

Initial release

2021-03-24