Summary of fit of qtl model
Print summary information about the results of fitqtl
.
## S3 method for class 'fitqtl' summary(object, pvalues=TRUE, simple=FALSE, ...)
object |
Output from |
pvalues |
If FALSE, don't include p-values in the summary. |
simple |
If TRUE, don't include p-values or sums of squares in the summary. |
... |
Ignored at this point. |
An object of class summary.fitqtl
, which is not all that
different than the input, but when printed gives summary information
about the results.
Hao Wu; Karl W Broman, broman@wisc.edu
data(fake.f2) # take out several QTLs and make QTL object qc <- c(1, 8, 13) qp <- c(26, 56, 28) fake.f2 <- subset(fake.f2, chr=qc) fake.f2 <- calc.genoprob(fake.f2, step=2, err=0.001) qtl <- makeqtl(fake.f2, qc, qp, what="prob") # fit model with 3 interacting QTLs interacting # (performing a drop-one-term analysis) lod <- fitqtl(fake.f2, pheno.col=1, qtl, formula=y~Q1*Q2*Q3, method="hk") summary(lod)
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