Print summary of ripple results
Print marker orders, from the output of the function ripple,
for which the log10 likelihood relative to the initial order is above
a specified cutoff.
## S3 method for class 'ripple' summary(object, lod.cutoff = -1, ...)
object |
An object of class |
lod.cutoff |
Only marker orders with LOD score (relative to the
initial order) above this cutoff will be displayed. For output of
|
... |
Ignored at this point. |
An object of class summary.ripple, whose rows correspond to
marker orders with likelihood (or number of obligate crossovers)
within some cutoff of the initial order. If no marker order, other
than the initial one, has likelihood within the specified range, the
initial and next-best orders are returned.
Karl W Broman, broman@wisc.edu
## Not run: data(badorder) rip1 <- ripple(badorder, 1, 7) summary(rip1) rip2 <- ripple(badorder, 1, 2, method="likelihood") summary(rip2) badorder <- switch.order(badorder, 1, rip2[2,]) ## End(Not run)
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