qtl2: clean_scan1 – R documentation

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clean_scan1

Clean scan1 output

Clean scan1 output by replacing negative values with NA and remove rows where all values are NA.

clean_scan1(object, ...)

## S3 method for class 'scan1'
clean(object, ...)

`object`	Output of `scan1()`.
`...`	Ignored at present

The input object with negative values replaced with NAs and then rows with all NAs removed.

iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))

pr <- calc_genoprob(iron)
out <- scan1(pr, iron$pheno)

out <- clean(out)

Quantitative Trait Locus Mapping in Experimental Crosses

v0.24

GPL-3

Authors

Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>), R Core Team [ctb]

Initial release

2020-12-16