Calculate SNP genotype matrix from strain distribution patterns
Calculate the matrix of SNP genotypes from a vector of strain distribution patterns (SDPs).
invert_sdp(sdp, n_strains)
sdp |
Vector of strain distribution patterns (integers between 1 and 2^n-2 where n is the number of strains. |
n_strains |
Number of strains |
Matrix of SNP genotypes, markers x strains, coded as 1 (AA) and 3 (BB). Markers with values other than 1 or 3 are omitted, and monomorphic markers, are omitted.
sdp <- c(m1=1, m2=12, m3=240) invert_sdp(sdp, 8)
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.