qtl2: max_compare_geno – R documentation

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max_compare_geno

Find pair with most similar genotypes

From results of compare_geno(), show the pair with most similar genotypes.

max_compare_geno(object, ...)

## S3 method for class 'compare_geno'
max(object, ...)

`object`	A square matrix with genotype comparisons for pairs of individuals, as output by `compare_geno()`.
`...`	Ignored

Data frame with individual pair, proportion matches, number of mismatches, number of matches, and total markers genotyped.

grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
cg <- compare_geno(grav2)
max(cg)

Quantitative Trait Locus Mapping in Experimental Crosses

v0.24

GPL-3

Authors

Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>), R Core Team [ctb]

Initial release

2020-12-16