qtl2: reduce_map_gaps – R documentation

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reduce_map_gaps

Reduce the lengths of gaps in a map

Reduce the lengths of gaps in a map

reduce_map_gaps(map, min_gap = 50)

`map`	Genetic map as a list of vectors (each vector is a chromosome and contains the marker positions).
`min_gap`	Minimum gap length to return.

Input map with any gaps greater than min_gap reduced to min_gap.

iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
rev_map <- reduce_map_gaps(iron$gmap, 30)

Quantitative Trait Locus Mapping in Experimental Crosses

v0.24

GPL-3

Authors

Karl W Broman [aut, cre] (<https://orcid.org/0000-0002-4914-6671>), R Core Team [ctb]

Initial release

2020-12-16