Basic summary of compare_geno object
From results of compare_geno(), show pairs of individuals with similar genotypes.
summary_compare_geno(object, threshold = 0.9, ...) ## S3 method for class 'compare_geno' summary(object, threshold = 0.9, ...) ## S3 method for class 'summary.compare_geno' print(x, digits = 2, ...)
object |
A square matrix with genotype comparisons for pairs
of individuals, as output by |
threshold |
Minimum proportion matches for a pair of individuals to be shown. |
... |
Ignored |
x |
Results of |
digits |
Number of digits to print |
Data frame with names of individuals in pair, proportion matches, number of mismatches, number of matches, and total markers genotyped. Last two columns are the numeric indexes of the individuals in the pair.
grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
cg <- compare_geno(grav2)
summary(cg)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.