rbioapi: rba_reactome_interactors_psicquic – R documentation

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rba_reactome_interactors_psicquic

The interface From Reactome to PSICQUIC

Description

You can call this function in two scenarios: 1- To retrieve information of all available PSICQUIC resources, call the function without providing any argument; i.e rba_reactome_interactors_psicquic(). 2-To retrieve a list of interactors of specific protein(s), fill out the function's arguments.

Usage

rba_reactome_interactors_psicquic(
  proteins = NA,
  resource = NA,
  details = TRUE,
  ...
)

Arguments

`proteins`	Proteins to retrieve PSICQUIC interactors.
`resource`	The PSICQUIC resource for your provided proteins. Call rba_reactome_interactors_psicquic() without argument to get the available options.
`details`	Logical: If TRUE (default) a detailed list of interactors will be returned. If FALSE, only a summary of available interactors will be returned.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

Depending your input, a list containing the detailed or summary of PSICQUIC interactions or a data frame of all registered PSICQUIC resources.

Corresponding API Resources

"POST https://reactome.org/ContentService/interactors/psicquic/molecules/ resource/details" "POST https://reactome.org/ContentService/interactors/psicquic/molecules/ resource/summary" "GET https://reactome.org/ContentService/interactors/psicquic/resources"

References

Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
Reactome Content Services API Documentation

Examples

rba_reactome_interactors_psicquic()


rba_reactome_interactors_psicquic(proteins = c("TP53", "MYC"),
    resource = "BioGrid",
    details = FALSE)


rba_reactome_interactors_psicquic(proteins = c("TP53", "MYC"),
    resource = "BioGrid",
    details = TRUE)

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release