Get Events Contained in an Upstream Events
A Reactome Event could be comprised of other events (meaning, a pathway that include other pathways itself). Use this function to recursively return all the events which reside downstream of your provided event ID (or an attribute of that events).
rba_reactome_pathways_events(event_id, attribute_name = NA, ...)
event_id |
Reactome event's database ID (DbId) or Stable ID (StId). |
attribute_name |
An attribute of the events to be returned instead of the whole events. see Reactome Data Schema: Event for available options. |
... |
rbioapi option(s). Refer to |
By Reactome's definition, Events are the building blocks of biological processes and could be of two main classes: "Pathway" or "Reaction-like events". The events are organized in a hierarchical structure; and each event could be child or parent to another event; The hierarchy will always begin with a "Top level pathway" event. Also note that a given event could be part of more that one hierarchies.
Data frame where each row is a contained event and columns are event's attributes. If an "attribute_name" argument was provided, a character vector will be returned.
"GET https://reactome.org/ContentService/data/pathway/id/
containedEvents"
"GET https://reactome.org/ContentService/data/pathway/id/
containedEvents/attributeName"
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
Other "Reactome Content Service - Pathway Related Queries":
rba_reactome_pathways_low(),
rba_reactome_pathways_top()
rba_reactome_pathways_events(event_id = "R-HSA-5673001")
rba_reactome_pathways_events(event_id = "R-HSA-5673001",
attribute_name = "displayName")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.