Get Reactome Species
Use this function to retrieve a table of Available species in Reactome.
rba_reactome_species(only_main = FALSE, ...)
only_main |
Logical: If set to TRUE, will only return species which have either manually-curated or computationally inferred pathways. |
... |
rbioapi option(s). Refer to |
Data frame where each row is a species and columns are pertinent information.
"GET https://reactome.org/ContentService/data/species/all"
"GET https://reactome.org/ContentService/data/species/main"
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
rba_reactome_species() rba_reactome_species(only_main = TRUE)
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.