rbioapi: rba_uniprot_features – R documentation

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rba_uniprot_features

Get UniProt protein sequence features by accession

Use this function to retrieve sequence annotations (features) of a protein by it's UniProt accession.

rba_uniprot_features(accession, types = NA, categories = NA, ...)

`accession`	UniProtKB primary or secondary accession.
`types`	Sequence annotation (Features) types. accepted values are: "INIT_MET", "SIGNAL", "PROPEP", "TRANSIT", "CHAIN", "PEPTIDE", "TOPO_DOM", "TRANSMEM", "DOMAIN", "REPEAT", "CA_BIND", "ZN_FING", "DNA_BIND", "NP_BIND", "REGION", "COILED", "MOTIF", "COMPBIAS", "ACT_SITE", "METAL", "BINDING", "SITE", "NON_STD", "MOD_RES", "LIPID", "CARBOHYD", "DISULFID", "CROSSLNK", "VAR_SEQ", "VARIANT", "MUTAGEN", "UNSURE", "CONFLICT", "NON_CONS", "NON_TER", "HELIX", "TURN", "STRAND" and/or "INTRAMEM". You can provide up to 20 types.
`categories`	Sequence annotation (Features) categories (subsection). accepted values are: "MOLECULE_PROCESSING", "TOPOLOGY", "SEQUENCE_INFORMATION", "STRUCTURAL", "DOMAINS_AND_SITES", "PTM", "VARIANTS" and/or "MUTAGENESIS". You can provide up to 8 categories.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

A list in which you can find all of your given protein's sequence annotations in a sub-list named "features".

"GET https://www.ebi.ac.uk/proteins/api/features/accession"

Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation

rba_uniprot_features("Q99616")


rba_uniprot_features(accession = "Q99616", types = "DISULFID")

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release