Search Gene-Centric Proteins
Using this function you can search UniProt for available gene-centrics from proteomes. For more information, see What are proteomes? and Automatic gene-centric isoform mapping for eukaryotic reference proteome entries. You may also refine your search with modifiers upid, accession and gene. refer to "Arguments section" for more information.
rba_uniprot_genecentric_search(upid = NA, accession = NA, gene = NA, ...)
upid |
UniProt Proteome identifier (UPID). You can provide up to 100 UPIDs. |
accession |
UniProtKB primary or secondary accession(s). You can provide up to 100 accession numbers. |
gene |
unique gene identifier(s) found in MOD, Ensembl, Ensembl Genomes, OLN, ORF or UniProt Gene Name. |
... |
rbioapi option(s). Refer to |
Note that this is a search function. Thus, you are not required to fill every argument; You may use whatever combinations of arguments you see fit for your query.
a list containing gene-centric proteins search hits.
"GET https://ebi.ac.uk/proteins/api/genecentric"
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Proteomes":
rba_uniprot_genecentric(),
rba_uniprot_proteomes_search(),
rba_uniprot_proteomes()
rba_uniprot_genecentric_search(accession = "P59594") rba_uniprot_genecentric_search(gene = "Spike") rba_uniprot_genecentric_search(upid = "UP000000354")
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