rbioapi: rba_uniprot_proteomics – R documentation

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rba_uniprot_proteomics

Get Proteomics Peptides Mapped to UniProt Protein

Description

UniProt maps proteomics peptides from different sources to the proteins' sequences. Using this function, you can retrieve all the proteomics peptides features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_proteomics(accession, ...)

Arguments

`accession`	UniProtKB primary or secondary accession.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

A list containing the proteomics peptides features of your provided UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/accession"

References

Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation

Examples

rba_uniprot_proteomics(accession = "P25942")

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release