Get Shortest Path Between Two Taxonomy Nodes
Use this function to retrieve the shortest path between two nodes in the taxonomy tree of UniProt Taxonomy database.
rba_uniprot_taxonomy_relationship(from, to, ...)
from |
NCBI taxonomic identifier of your initial node. |
to |
NCBI taxonomic identifier of your final node. |
... |
rbioapi option(s). Refer to |
a nested list containing the node which are in the shortest path between your provided nodes.
"GET https://ebi.ac.uk/proteins/api/relationship"
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy_lca(),
rba_uniprot_taxonomy_lineage(),
rba_uniprot_taxonomy_name(),
rba_uniprot_taxonomy_path(),
rba_uniprot_taxonomy()
rba_uniprot_taxonomy_relationship(from = 9606, to = 10090)
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