rbioapi: rba_uniprot_uniparc_sequence – R documentation

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rba_uniprot_uniparc_sequence

Get UniParc Entries by Sequence

Description

Retrieve UniParc Entry by providing an exact sequence. Note that partial matches will not be accepted. You can also filter the returned content of the returned UniParc entry. see "Argument" section for more details.

Usage

rba_uniprot_uniparc_sequence(
  sequence,
  rf_dd_type = NA,
  rf_db_id = NA,
  rf_active = NA,
  rf_tax_id = NA,
  ...
)

Arguments

`sequence`	Exact UniParc protein sequence. Partial matches will not be accepted.
`rf_dd_type`	Filter the content of the UniParc entry by cross-reference names. You can provide multiple values.
`rf_db_id`	Filter the content of the UniParc entry by protein identifiers in any cross-reference database. You can provide multiple values.
`rf_active`	(logical ) Filter the content of UniParc entry based on active status on source database: NA: don't filter contents based on active status. TRUE: only return contents which are still active. FALSE: Only return contents which are not active.
`rf_tax_id`	(Numeric) Filter the content of the UniParc entry by NIH-NCBI Taxon ID. You can provide multiple values.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

A list which correspond to a UniParc entry.

Corresponding API Resources

"POST https://ebi.ac.uk/proteins/api/uniparc/sequence"

References

Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation

Examples

rba_uniprot_uniparc_sequence("GMRSCPRGCSQRGRCENGRCVCNPGYTGEDC")

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release