rbioapi: rba_mieaa_convert_version – R documentation

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rba_mieaa_convert_version

Convert miRNA accession Between Different miRBase Versions

Description

miEAA works with miRBASE v22 accession. Using This function you can convert a set of mature or precursor miRNA accession between two given miRBase versions.

Usage

rba_mieaa_convert_version(
  mirna,
  mirna_type,
  input_version,
  output_version,
  simple_output = FALSE,
  ...
)

Arguments

`mirna`	A vector of miRNA accessions to be converted.
`mirna_type`	Type of your provided miRNA accession. either "mature" or "precursor".
`input_version`	(numeric) miRBase version of your provided miRNA accessions.
`output_version`	(numeric) To what version should your miRNA accessions be converted?
`simple_output`	(logical) If FALSE (default), the result will be a two-columned data frame with your input and output accessions. Otherwise, if TRUE, only the output miRNA accessions will be returned.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

Depending on the arguments, a data frame or a character vectors containing the miRNA accessions in your output version.

Corresponding API Resources

"POST https://ccb-compute2.cs.uni-saarland.de/mieaa2/api/v1/mirbase_converter/"

References

Fabian Kern, Tobias Fehlmann, Jeffrey Solomon, Louisa Schwed, Nadja Grammes, Christina Backes, Kendall Van Keuren-Jensen, David Wesley Craig,Eckart Meese, Andreas Keller, miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems, Nucleic Acids Research, Volume 48, Issue W1, 02 July 2020, Pages W521–W528, https://doi.org/10.1093/nar/gkaa309
miEAA browsable API tutorial

Examples

Sys.sleep(1) # to prevent 429 error during R CMD check
rba_mieaa_convert_version(mirna = c("hsa-miR-20b-5p", "hsa-miR-144-5p"),
    mirna_type = "mature", input_version = 22, output_version =  16)

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release