Import Saved Analysis JSON to Reactome
If you have a JSON file of analysis results (only obtained via
rba_reactome_analysis_download with the result argument
set to "results", or "results_gz"), you can import the results back to
Reactome and retrieve a token.
This is useful when you want to use other Reactome services which require
a token but you do not have a token or your token has been
expired (i.e. more than 7 days passed from your analysis).
rba_reactome_analysis_import(input, input_format = NA, ...)
input |
A local file path or URL that points to your -optionally gzipped- JSON file. |
input_format |
(Optional) This function will automatically identify your provided input's format. But in case of unexpected issues or if you want to be explicit, set this argument to one of:
|
... |
rbioapi option(s). Refer to |
A list containing the new token and other information of your imported results.
"GET https://reactome.org/AnalysisService/import/"
"GET https://reactome.org/AnalysisService/import/form"
"GET https://reactome.org/AnalysisService/import/url"
Fabregat A, Sidiropoulos K, Viteri G, Forner O, Marin-Garcia P, Arnau V, D'Eustachio P, Stein L, Hermjakob H. Reactome pathway analysis: a high-performance in-memory approach. BMC bioinformatics. 2017 Mar;18(1) 142. doi: 10.1186/s12859-017-1559-2. PubMed PMID: 28249561. PubMed Central PMCID: PMC5333408.
Other "Reactome Analysis Service":
rba_reactome_analysis_download(),
rba_reactome_analysis_mapping(),
rba_reactome_analysis_pdf(),
rba_reactome_analysis_species(),
rba_reactome_analysis_token(),
rba_reactome_analysis()
## Not run:
rba_reactome_analysis_import("c:/rbioapi/res.json")
## End(Not run)
## Not run:
rba_reactome_analysis_import("https://qaz.com/res.json.gz")
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.