rbioapi: rba_reactome_diseases – R documentation

Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

rba_reactome_diseases

Reactome Diseases

This function Retrieve a list of all diseases or disease DOIDs annotated in Reactome.

rba_reactome_diseases(doid = FALSE, ...)

`doid`	(logical) Return disease DOIDs instead of diseases? (default = FALSE)
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Data frame containing all the disease annotation available at Reactome. If doid was set to TRUE, DOID info will be returned instead.

"GET https://reactome.org/ContentService/GET data/diseases" "GET https://reactome.org/ContentService/GET data/diseases/doid"

Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
Reactome Content Services API Documentation

rba_reactome_diseases()


rba_reactome_diseases(doid = TRUE)

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release