rbioapi: rba_reactome_exporter_event – R documentation

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rba_reactome_exporter_event

Exports A Reactome Event to SBGN or SBML

Description

This function will export a provided Reactome Event (Pathway or Reaction) to a SBGN (Systems Biology Graphical Notation) or SBML (Systems Biology Markup Language)

Usage

rba_reactome_exporter_event(event_id, output_format, save_to = NA, ...)

Arguments

`event_id`	Reactome event's database IDs (DbId) or Stable IDs (StId).
`output_format`	Either "sbgn" or "sbml".
`save_to`	NA or Character: NA: Save the file to an automatically-generated path. Character string: A valid file path to save the file to.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

NULL, According to the inputs, a SBGN or SBML file will be saved to disk.

Corresponding API Resources

"GET https://reactome.org/ContentService//exporter/event/ identifier.sbgn" "GET https://reactome.org/ContentService//exporter/event/ identifier.sbml"

References

Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
Reactome Content Services API Documentation

Examples

## Not run: 
rba_reactome_exporter_event(event_id = "R-HSA-177929",
    output_format = "sbgn",
    save_to = "R-HSA-177929.sbgn")

## End(Not run)
## Not run: 
rba_reactome_exporter_event(event_id = "R-HSA-177929",
    output_format = "sbgn")

## End(Not run)

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release