Get Orthologous (Computationally Inferred) Events
Reactome incorporate manually curated human reactions and PANTHER's protein homology data to Computationally infer events in other eukaryotic species.
rba_reactome_orthology(event_ids, species_dbid, ...)
event_ids |
Human Reactome event ID(s) to retrieve their orthologous events. |
species_dbid |
Reactome database ID (DbId) of the target species. (e.g
Mus musculus is 48892). Refer to
|
... |
rbioapi option(s). Refer to |
In version 73 (11 June 2020), using an orthology-based approach,
Homo sapiens events was projected to 18,654 orthologous pathways (with
81,835 orthologous proteins) in 15 non-human species.
Refer to
Reactome Computationally Inferred Events for more information.
List containing found Orthologous event(s) in your provided species and their pertinent information.
"POST https://reactome.org/ContentService/data/orthologies/ids/ species/speciesId"
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
rba_reactome_orthology(event_ids = c("R-HSA-6799198", " R-HSA-72764"),
species_dbid = 49633)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.