Query and Retrieve any Reactome knowledge-base Object
Using this Comprehensive function, You can Retrieve any object from Reactome knowledge-base
rba_reactome_query( ids, enhanced = FALSE, map = FALSE, attribute_name = NA, ... )
ids |
A single or Multiple database IDs (DbId), Stable IDs (StId) or a mixture of both. |
enhanced |
Logical: (Default = FALSE) If 'TRUE' more information on the provided entry will be returned. (You can set this argument to 'TRUE' Only when you provide a single ID). |
map |
(Default = FALSE) Should the provided IDs be mapped? This argument will only be considered when you provide multiple IDs. (e.g. when you provide previous version of stable identifiers.) |
attribute_name |
(Optional) Only Return an Attribute of the provided Database Object. (You can use this argument Only when you provide a single ID) |
... |
rbioapi option(s). Refer to |
List containing your query outputs.
"POST https://reactome.org/ContentService/data/query/ids"
"POST https://reactome.org/ContentService/data/query/ids/map"
"GET https://reactome.org/ContentService/data/query/id"
s"GET https://reactome.org/ContentService//data/query/enhanced/id"
"GET https://reactome.org/ContentService/data/query/id/attributeName"
Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.
rba_reactome_query(ids = c("8953958", "11982506", "R-ALL-9649879"))
rba_reactome_query(ids = "R-HSA-9656256", enhanced = TRUE)
rba_reactome_query(ids = "8863054", attribute_name = "displayName")Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.