rbioapi: rba_uniprot_proteins – R documentation

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rba_uniprot_proteins

Get UniProt entry by accession

Description

Use this function to retrieve a UniProt Entry by it's UniProt accession. You can also use "isoform" or "interaction" arguments to retrieve isoforms or interactor proteins of that entry. Note that in one function call you can only set none or only one of "isoform" or "interaction" as TRUE, not both of them.

Usage

rba_uniprot_proteins(accession, interaction = FALSE, isoforms = FALSE, ...)

Arguments

`accession`	UniProtKB primary or secondary accession.
`interaction`	Logical: (default = FALSE) Only retrieve interaction information of your provided UniProt entity?
`isoforms`	Logical: (default = FALSE) Only retrieve isoforms of your provided UniProt entity?
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

A list that contains UniProt protein informations with your provided accession.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/proteins/accession"
"GET https://ebi.ac.uk/proteins/api/proteins/interaction/accession"
"GET https://ebi.ac.uk/proteins/api/proteins/accession/isoforms"

References

Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation

Examples

rba_uniprot_proteins(accession = "P01730")


rba_uniprot_proteins(accession = "P01730", interaction = TRUE)


rba_uniprot_proteins(accession = "Q29983", isoforms = TRUE)

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release