Search UniProt Taxonomic Names
Using this function, you can search and retrieve taxonomic nodes using their names from UniProt Taxonomy database.
rba_uniprot_taxonomy_name( name, field = "scientific", search_type = "equal_to", node_only = TRUE, page_size = 200, page_number = 1, ... )
name |
a name to to be used as search query. |
field |
Specify the field that your provided name should be searched. It should be one of : "scientific" (default), "common" or "mnemonic". |
search_type |
The logical relationship between your provided search query and the taxonomic name field. It should be one of "equal_to" (default), "start_with", "end_with" or "contain". |
node_only |
(logical) Retrieve only the node(s) information and exclude URL links to parents, siblings and children nodes. default = TRUE |
page_size |
(numeric) Your search results may be very long, thus UniProt API will paginate the results, you may use this argument to control the pagination. maximum value is 200. |
page_number |
(numeric) Your search results may be very long, thus UniProt API will paginate the results, you may use this argument to control the pagination. maximum value is 200. |
... |
rbioapi option(s). Refer to |
a list containing taxonomic nodes that match your provided inputs.
"GET https://ebi.ac.uk/proteins/api/name/name"
"GET https://ebi.ac.uk/proteins/api/name/name/node"
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy_lca(),
rba_uniprot_taxonomy_lineage(),
rba_uniprot_taxonomy_path(),
rba_uniprot_taxonomy_relationship(),
rba_uniprot_taxonomy()
rba_uniprot_taxonomy_name(name = "homo", field = "scientific",
search_type = "start_with")
rba_uniprot_taxonomy_name(name = "adenovirus", field = "scientific",
search_type = "contain", page_size = 200, page_number = 2)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.