rbioapi: rba_uniprot_uniparc_bestguess – R documentation

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rba_uniprot_uniparc_bestguess

Get UniParc Longest Sequence for Entries

Description

This function returns the UniParc Entry with a cross-reference to the longest active UniProtKB sequence (preferably from Swiss-Prot and if not then TrEMBL). If it finds more than one longest active UniProtKB sequence it returns 400 (Bad Request) error response with the list of cross references found.

Usage

rba_uniprot_uniparc_bestguess(
  upi = NA,
  accession = NA,
  db_id = NA,
  gene = NA,
  taxid = NA,
  ...
)

Arguments

`upi`	unique UniParc Identifier.
`accession`	UniProtKB primary or secondary accession(s). You can provide up to 100 accession numbers.
`db_id`	Protein ID in the cross-reference (external) database. You can provide up to 100 IDs.
`gene`	UniProt gene name(s). You can provide up to 20 gene names.
`taxid`	NIH-NCBI Taxon ID. You can provide up to 20 taxon IDs.
`...`	rbioapi option(s). Refer to `rba_options`'s arguments documentation for more information on available options.

Value

A list where each element correspond to a UniParc entry.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/uniparc/bestguess"

References

Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation

Examples

rba_uniprot_uniparc_bestguess("UPI00000000C9")

rbioapi

User-Friendly R Interface to Biologic Web Services' API

v0.7.0

GPL-3

Authors

Moosa Rezwani [aut, cre, cph]

Initial release