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reactomeEXTID2PATHID

An annotation data object that maps Entrez Gene identifiers to Reactome pathway identifiers


Description

reactomeEXTID2PATHID maps Entrez Gene identifiers to Reactome pathway identifiers.

Details

This is an R object containing key and value pairs. Keys are Entrez Gene identifiers and values are the corresponding Reactome pathway identifiers. Values are vectors of length 1 or greater depending on whether a given external identifier can be mapped to only one or more Reactome pathway identifiers.

Reactome pathway identifiers are the identifiers used by Reactome for various pathways.

Mappings between Reactome pathway identifiers and pathway names can be obtained through another annotation data object named reactomePATHID2NAME.

Mappings were based on data provided by: Reactome http://reactome.org/download/current/NCBI2Reactome_All_Levels.txt & http://reactome.org/download/current/ReactomePathways.txt With a date stamp from the source that is the same as the time stamp of the package.

References

Examples

xx <- as.list(reactomeEXTID2PATHID)
	if(length(xx) > 0){
		# Get the value of the first key
		xx[[1]]
		# Get the values for multiget for a few keys
		if(length(xx) >= 3){
			xx[1:3]
		}
	}

reactome.db

A set of annotation maps for reactome

v1.74.0
CC BY 4.0
Authors
Willem Ligtenberg
Initial release

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