reactome.db: reactomePATHNAME2ID – R documentation

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reactomePATHNAME2ID

An annotation data object that maps Reactome pathway names to identifiers for the corresponding pathway names used by Reactome

Description

reactomePATHNAME2ID maps Reactome pathway names to pathway identifiers used by Reactome for various pathways

Details

This is an R object containing key and value pairs. Keys are Reactome pathway names and values are pathway identifiers. Values are vectors of length 1.

Mappings were based on data provided by: Reactome http://reactome.org/download/current/ReactomePathways.txt With a date stamp from the source that is the same as the time stamp of the package.

References

http://www.reactome.org/

Examples

xx <- as.list(reactomePATHNAME2ID)
	if(length(xx) > 0){
		# get the value for the first key
		xx[[1]]
		# Get the values for a few keys
		if(length(xx) >= 3){
			xx[1:3]
		}
	}

reactome.db

A set of annotation maps for reactome

v1.74.0

CC BY 4.0

Authors

Willem Ligtenberg

Initial release