rgenie: deletion_alleles_plot – R documentation

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deletion_alleles_plot

Plots unique deletion alleles and their "pileup" count profile separately for cDNA and gDNA.

Plots unique deletion alleles and their "pileup" count profile separately for cDNA and gDNA.

deletion_alleles_plot(del_result, viewing_window = 40, color_by = "window")

`del_result`	Result from a call to deletion_analysis.
`viewing_window`	Window on either size of the CRISPR cut site to show in the plot.
`color_by`	A string with one of the values: "none" (default), "window", or "sharing".

Returns a ggplot object.

# Note: First run deletion_analysis()
# mul1_del_results is a pre-loaded result

deletion_alleles_plot(mul1_del_results[[1]])

Analysis of GenIE Experiments

v1.0.0

MIT + file LICENSE

Authors

Jeremy Schwartzentruber [aut, cre]

Initial release