Downloads example data for rgenie.
The example data is a set of BAM files for GenIE replicates.
download_example(dir, name = "MUL1", overwrite = FALSE, quiet = FALSE)
dir |
Directory where example data should be put. |
name |
The name of the example to download. |
overwrite |
If FALSE, then data are not downloaded if directory 'dir/name' already exists. Otherwise, all data are downloaded (possibly overwriting files). |
quiet |
If TRUE, then no messages are printing during the analysis. |
Returns a list containing the same tables as in an individual result, but concatenated across regions.
download_example(dir = "~/genie_example", name = "MUL1")
# Data are downloaded and we can run an rgenie analysis
setwd("~/genie_example/MUL1/")
regions = readr::read_tsv("mul1.genie_regions.tsv")
replicates = readr::read_tsv("mul1.genie_replicates.tsv")
grep_results = grep_analysis(regions, replicates)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.