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calcGeneVars

Calculate variance of gene expression across cells in an online fashion

Description

This function calculates the variance of gene expression values across cells for hdf5 files.

Usage

calcGeneVars(object, chunk = 1000, verbose = TRUE)

Arguments

object

liger object. The input raw.data should be a list of hdf5 files. Should call normalize and selectGenes before calling.
chunk

size of chunks in hdf5 file. (default 1000)
verbose

Print progress bar/messages (TRUE by default)

Value

liger object with scale.data slot set.

rliger

Linked Inference of Genomic Experimental Relationships

v1.0.0
GPL-3
Authors
Joshua Welch [aut, ctb], Chao Gao [aut, ctb, cre], Jialin Liu [aut, ctb], Joshua Sodicoff [aut, ctb], Velina Kozareva [aut, ctb], Evan Macosko [aut, ctb], Paul Hoffman [ctb], Ilya Korsunsky [ctb], Robert Lee [ctb]
Initial release
2021-04-18

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