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R
rliger

getProportionMito

Calculate proportion mitochondrial contribution

Description

Calculates proportion of mitochondrial contribution based on raw or normalized data.

Usage

getProportionMito(object, use.norm = FALSE)

Arguments

object

liger object.
use.norm

Whether to use cell normalized data in calculating contribution (default FALSE).

Value

Named vector containing proportion of mitochondrial contribution for each cell.

Examples

## Not run: 
# ligerex (liger object), factorization complete
ligerex@cell.data[["percent_mito"]] <- getProportionMito(ligerex)

## End(Not run)
rliger

Linked Inference of Genomic Experimental Relationships

v1.0.0
GPL-3
Authors
Joshua Welch [aut, ctb], Chao Gao [aut, ctb, cre], Jialin Liu [aut, ctb], Joshua Sodicoff [aut, ctb], Velina Kozareva [aut, ctb], Evan Macosko [aut, ctb], Paul Hoffman [ctb], Ilya Korsunsky [ctb], Robert Lee [ctb]
Initial release
2021-04-18

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