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plotClusterProportions

Plot cluster proportions by dataset


Description

Generates plot of clusters sized by the proportion of total cells

Usage

plotClusterProportions(object, return.plot = FALSE)

Arguments

object

liger object. Should call quantileAlignSNF before calling.

return.plot

Return ggplot object (default FALSE)

Value

print plot to console (return.plot = FALSE); ggplot object (return.plot = TRUE) list of ggplot objects.

Examples

## Not run: 
# ligerex (liger object), factorization complete input
ligerex <- quantile_norm(ligerex)
# plot cluster proportions
plotClusterProportions(ligerex)

## End(Not run)

rliger

Linked Inference of Genomic Experimental Relationships

v1.0.0
GPL-3
Authors
Joshua Welch [aut, ctb], Chao Gao [aut, ctb, cre], Jialin Liu [aut, ctb], Joshua Sodicoff [aut, ctb], Velina Kozareva [aut, ctb], Evan Macosko [aut, ctb], Paul Hoffman [ctb], Ilya Korsunsky [ctb], Robert Lee [ctb]
Initial release
2021-04-18

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